Match details
Record ID: |
OP007379.1 |
Database: |
nt |
Go to original record |
Description: |
Buddleja lindleyana chloroplast, complete genome. |
Taxon: |
Buddleja lindleyana |
Original size: |
154435 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48188 |
48755 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgttgt ctcaaaacaa aggttcagaa
151 ggcgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttaact gcgttggtag cggaatcttt cgatcgaaac ttcagaaaga
251 gtgacggata aacgtatcta ttgaatacta tatcaaatat atcaaatgat
301 taatgatgga ccgaatctgt atttttttat atgaaaaatg gaaaaattgg
351 tgtgaattta ttccacattg aagaaagaat caaataaaat attcattcat
401 caaatcattc actccatagt ctgatagatc ttttaaaaaa ctgattaatc
451 ggacgagaat aaagatagag tcccattcta catgtcaata ccggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.