Match details
Record ID: |
OP007383.1 |
Database: |
nt |
Go to original record |
Description: |
Buddleja sessilifolia chloroplast, complete genome. |
Taxon: |
Buddleja sessilifolia |
Original size: |
154125 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48083 |
48640 |
+ |
558 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 ggcgaaaaag gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttaactg cgttggtagc ggaatctttc gatcgaaact tcagaaagag
251 tgacggataa acgtatctat tgaatactat atcaaatgat taatgataga
301 ccgaatctgt atttttttat atgaaaaatg gaaaaattgg tgtgaattta
351 ttccacattg aagaaagaat caaataaaat attcattcat caaatcattc
401 actccatagt ctgatagatc ttttaaagaa ctgattaatc ggacgagaat
451 aaagatagag tcccattcta catgtcaata ccggcaacaa tgaaatttat
501 agtaagagga aaatccgtcg actttaaaaa tcgtgagggt tcaagtccct
551 ctatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
558 |
539 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.