Match details
Record ID: |
OP007371.1 |
Database: |
nt |
Go to original record |
Description: |
Buddleja alternifolia chloroplast, complete genome. |
Taxon: |
Buddleja alternifolia |
Original size: |
154396 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48131 |
48689 |
+ |
559 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgttgt ctcaaaacaa aggttcagaa
151 ggcgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttaact gcgttggtag cggaatcttt cgatcgaaac ttcagaaaga
251 gtgacggata aacgtatcta ttgaatacta tatcaaatga ttaatgatgg
301 accgaatctg tattttttta tatgaaaaat ggaaaaattg gtgtgaattt
351 attccacatt gaagaaagaa tcaaataaaa tattcattca tcaaatcatt
401 cactccatag tctgatagat cttttaaaga actgattaat cggacgagaa
451 taaagataga gtcccattct acatgtcaat accggcaaca atgaaattta
501 tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
551 tctatcccc
View other 22 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
559 |
540 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.