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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY589126.1 nt Poa arida voucher PI 578806 trnT-tr... 1854 bp Poa arida QL-PLN-00-007 611 bp View
AY589127.1 nt Poa bulbosa voucher PI 314304 trnT-... 1844 bp Poa bulbosa QL-PLN-00-007 563 bp View
AY589128.1 nt Poa compressa voucher PI 243216 trn... 1870 bp Poa compressa QL-PLN-00-007 611 bp View
AY589132.1 nt Poa interior voucher PI 236909 trnT... 1870 bp Poa interior QL-PLN-00-007 611 bp View
AY589134.1 nt Poa ligulata voucher PI 517033 trnT... 1837 bp Poa ligulata QL-PLN-00-007 563 bp View
AY589135.1 nt Poa nemoralis voucher PI 3717759 tr... 1870 bp Poa nemoralis QL-PLN-00-007 611 bp View
AY589136.1 nt Poa nervosa voucher PI 232352 trnT-... 1874 bp Poa nervosa QL-PLN-00-007 616 bp View
AY589141.1 nt Puccinellia glaucescens voucher PI ... 1855 bp Puccinellia glaucescens QL-PLN-00-007 612 bp View
AY589143.1 nt Poa secunda voucher PI 504370 trnT-... 1854 bp Poa secunda QL-PLN-00-007 611 bp View
AY589144.1 nt Poa secunda voucher PI 578851 trnT-... 1854 bp Poa secunda QL-PLN-00-007 611 bp View
AY589146.1 nt Poa sinaica voucher PI 206741 trnT-... 1856 bp Poa sinaica QL-PLN-00-007 611 bp View
AY589147.1 nt Poa supina trnT-trnL intergenic spa... 1802 bp Poa supina QL-PLN-00-007 616 bp View
AY589148.1 nt Poa trivialis voucher PI 204484 trn... 1847 bp Poa trivialis QL-PLN-00-007 611 bp View
AY651842.1 nt Chusquea coronalis tRNA-Leu gene an... 1003 bp Chusquea coronalis QL-PLN-00-007 606 bp View
AY651843.1 nt Phragmites australis tRNA-Leu gene ... 991 bp Phragmites australis QL-PLN-00-007 617 bp View
AY756935.1 nt Banara axilliflora tRNA-Leu (trnL) ... 618 bp Banara axilliflora QL-PLN-00-007 616 bp View
AY773282.1 nt Fitzalania heteropetala tRNA-Leu (t... 985 bp Meiogyne heteropetala QL-PLN-00-007 576 bp View
AY836535.1 nt Jasminum multiflorum tRNA-Leu (trnL... 957 bp Jasminum multiflorum QL-PLN-00-007 548 bp View
AY836536.1 nt Jasminum fruticans tRNA-Leu (trnL) ... 949 bp Chrysojasminum fruticans QL-PLN-00-007 574 bp View
AY836537.1 nt Jasminum nervosum tRNA-Leu (trnL) a... 944 bp Jasminum nervosum QL-PLN-00-007 549 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.