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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT650391.1 nt Myoporum sandwicense voucher PTBG05... 151671 bp Myoporum sandwicense QL-PLN-00-007 563 bp View
MT650392.1 nt Eremophila glabra voucher MELUD1191... 151569 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650394.1 nt Eremophila tietkensii voucher MELUD... 151789 bp Eremophila tietkensii QL-PLN-00-007 567 bp View
MT650395.1 nt Eremophila youngii voucher MELUD119... 151647 bp Eremophila youngii QL-PLN-00-007 565 bp View
MT650396.1 nt Eremophila scoparia voucher MELUD11... 151747 bp Eremophila scoparia QL-PLN-00-007 564 bp View
MT650397.1 nt Eremophila prolata voucher MELUD119... 151834 bp Eremophila prolata QL-PLN-00-007 567 bp View
MT650398.1 nt Eremophila decipiens voucher MELUD1... 151514 bp Eremophila decipiens QL-PLN-00-007 564 bp View
MT650399.1 nt Eremophila denticulata voucher MELU... 151562 bp Eremophila denticulata QL-PLN-00-007 565 bp View
MT650400.1 nt Eremophila drummondii voucher CBG97... 151679 bp Eremophila drummondii QL-PLN-00-007 565 bp View
MT650401.1 nt Myoporum sandwicense voucher PTBG07... 151703 bp Myoporum sandwicense QL-PLN-00-007 563 bp View
MT650402.1 nt Eremophila scoparia voucher MELU pe... 151723 bp Eremophila scoparia QL-PLN-00-007 566 bp View
MT650403.1 nt Eremophila christophori voucher MEL... 142353 bp Eremophila christophori QL-PLN-00-007 570 bp View
MT650405.1 nt Eremophila oblonga voucher MELU pen... 151594 bp Eremophila oblonga QL-PLN-00-007 565 bp View
MT650408.1 nt Eremophila demissa voucher MELUD119... 151601 bp Eremophila demissa QL-PLN-00-007 556 bp View
MT650409.1 nt Eremophila densifolia voucher MELUD... 151281 bp Eremophila densifolia QL-PLN-00-007 566 bp View
MT650412.1 nt Eremophila biserrata voucher MELUD1... 151545 bp Eremophila biserrata QL-PLN-00-007 565 bp View
MT650414.1 nt Eremophila purpurascens voucher MEL... 151586 bp Eremophila purpurascens QL-PLN-00-007 566 bp View
MT650415.1 nt Eremophila parvifolia voucher MELUD... 151899 bp Eremophila parvifolia QL-PLN-00-007 566 bp View
MT650417.1 nt Eremophila pterocarpa voucher MELUD... 147632 bp Eremophila pterocarpa QL-PLN-00-007 564 bp View
MT653696.1 nt Beckmannia syzigachne chloroplast, ... 136181 bp Beckmannia syzigachne QL-PLN-00-007 613 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.