Match details
Record ID: |
MT650400.1 |
Database: |
nt |
Go to original record |
Description: |
Eremophila drummondii voucher CBG9708046 plastid, partial genome. |
Taxon: |
Eremophila drummondii |
Original size: |
151679 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48260 |
48824 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 agcgaaaaaa aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgactgcgtt ggtagaggaa tctttccatc gaaacttcag
251 aaaggatgaa ggataaaggt atatattgaa tactatatca aatgattaat
301 gatggcccca atctgtatct gtattttttt atatgaaaaa tggaagaatt
351 ggtatgaagt gattccacat tgaagaaaga attaaatatt ccttcatcaa
401 atcattcact ccacagtctg atagttcttt taaagaactg attaatcgga
451 caagaataaa gatagagtcc cattctacat gtcaatattg gcaacaatgc
501 aatttatagt aagaggaaaa tccgtcgact tttaaagtcg tgagggttca
551 agtccctcta tcccc
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.