Match details
Record ID: |
MT650409.1 |
Database: |
nt |
Go to original record |
Description: |
Eremophila densifolia voucher MELUD119202a plastid, partial genome. |
Taxon: |
Eremophila densifolia |
Original size: |
151281 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47810 |
48375 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 agcgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201 acaaatggag ttgactgcgt tggtagagga atctttccat cgaaacttca
251 gaaaggatga aggataaagg tatatattga atactatatc aaatgattaa
301 tgatggcccc aatctgtatc tgtatttttt tatatgaaaa atggaagaat
351 tggtatgaag tgattccaca ttgaagaaag aattaaatat tccttcatca
401 aatcattcac tccacagtct gatagttctt ttaaagaact gattaatcgg
451 acaagaataa agatagagtc ccattctaca tgtcaatatt ggcaacaatg
501 caatttatag taagaggaaa atccgtcgac ttttaaagtc gtgagggttc
551 aagtccctct atcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.