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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT610066.1 nt Miscanthus ecklonii isolate TK089 c... 141132 bp Miscanthus ecklonii QL-PLN-00-007 526 bp View
MT610067.1 nt Dichanthium annulatum isolate TK013... 138116 bp Dichanthium annulatum QL-PLN-00-007 530 bp View
MT610068.1 nt Tripsacum cundinamarcae isolate TK1... 141000 bp Tripsacum cundinamarcae QL-PLN-00-007 532 bp View
MT610069.1 nt Urelytrum digitatum isolate TK042 c... 140488 bp Urelytrum digitatum QL-PLN-00-007 525 bp View
MT610070.1 nt Hyperthelia dissoluta isolate TK204... 139162 bp Hyperthelia dissoluta QL-PLN-00-007 528 bp View
MT610071.1 nt Tripsacum andersonii isolate TK118 ... 141021 bp Tripsacum andersonii QL-PLN-00-007 532 bp View
MT610072.1 nt Andropterum stolzii isolate TK050 c... 140468 bp Andropterum stolzii QL-PLN-00-007 525 bp View
MT610073.1 nt Mnesithea formosa isolate TK212 chl... 137525 bp Mnesithea formosa QL-PLN-00-007 525 bp View
MT610074.1 nt Monocymbium ceresiiforme isolate TK... 138471 bp Monocymbium ceresiiforme QL-PLN-00-007 525 bp View
MT610075.1 nt Paspalum malacophyllum isolate TK05... 143428 bp Paspalum malacophyllum QL-PLN-00-007 617 bp View
MT610077.1 nt Elionurus muticus isolate TK015 chl... 140368 bp Elionurus muticus QL-PLN-00-007 525 bp View
MT610078.1 nt Andropogon fastigiatus isolate TK23... 138598 bp Diectomis fastigiata QL-PLN-00-007 525 bp View
MT610079.1 nt Homozeugos eylesii isolate TK258 ch... 140561 bp Homozeugos eylesii QL-PLN-00-007 525 bp View
MT610080.1 nt Sorghastrum elliottii isolate TK187... 141129 bp Sorghastrum elliottii QL-PLN-00-007 527 bp View
MT610082.1 nt Sorghum sorghoides isolate TK293 ch... 140847 bp Sorghum sorghoides QL-PLN-00-007 526 bp View
MT610083.1 nt Capillipedium spicigerum isolate TK... 138282 bp Capillipedium spicigerum QL-PLN-00-007 525 bp View
MT610084.1 nt Tripsacum dactyloides var. floridan... 140959 bp Tripsacum dactyloides var. floridanum QL-PLN-00-007 526 bp View
MT610085.1 nt Anadelphia scyphofera isolate Pasqu... 138534 bp Anadelphia scyphofera QL-PLN-00-007 525 bp View
MT610087.1 nt Chionachne koenigii isolate TK057 c... 140306 bp Chionachne koenigii QL-PLN-00-007 525 bp View
MT610088.1 nt Sorghastrum nutans isolate TK035 ch... 140906 bp Sorghastrum nutans QL-PLN-00-007 527 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.