Match details
Record ID: |
MT610071.1 |
Database: |
nt |
Go to original record |
Description: |
Tripsacum andersonii isolate TK118 chloroplast, partial genome. |
Taxon: |
Tripsacum andersonii |
Original size: |
141021 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49464 |
49995 |
+ |
532 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaagat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctaaaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcac agaacccata ttataatata
251 ggttctttat ttgattttta gaatgaaatt aggaatgatt atgaaataga
301 aaattcataa ttttttttag aattattgtg aatctattcc aatcaaatat
351 tgagtaatca aatccttcaa ttcattgttt tcgagatctt ttaatttgga
401 aaagtggatt aatcggacga ggataaagag agagtcccat tctacatgtc
451 aatactgaca acaatgaaat ttctagtaaa aggaaaatcc gtcgacttta
501 taagtcgtga gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.39e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
532 |
513 |
2.39e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.