Match details
Record ID: |
MT610087.1 |
Database: |
nt |
Go to original record |
Description: |
Chionachne koenigii isolate TK057 chloroplast, partial genome. |
Taxon: |
Chionachne koenigii |
Original size: |
140306 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48705 |
49229 |
+ |
525 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cctgttttga aaaaacaagt ggttctcaaa
151 caagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcc aagtaataac gattaatcac agaacccata ttataatata
251 ggttctttat tttataatta gaatgaaatt aggaatgatt ttgaaataga
301 aaatcaataa tttttttaga attattgtga atctattcca atcgaatatt
351 gagtaatcaa atccttcaat tcattgtttt cgagatttgt taaaaagtgg
401 attaatcgga cgaggataaa gagagagtcc cattctacat gtcaatactg
451 acaacaatga aatttttagt aaaaggaaaa tccgtcgact ttataagtcg
501 tgagggttca agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.36e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
525 |
506 |
2.36e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.