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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY308489.1 nt Hoffmannseggia intricata isolate 27... 1049 bp Hoffmannseggia intricata QL-PLN-00-007 592 bp View
AY308490.1 nt Hoffmannseggia minor isolate H24 ch... 1033 bp Hoffmannseggia minor QL-PLN-00-007 590 bp View
AY308492.1 nt Hoffmannseggia miranda isolate H21 ... 1033 bp Hoffmannseggia miranda QL-PLN-00-007 589 bp View
AY308493.1 nt Hoffmannseggia ternata isolate H14 ... 1033 bp Hoffmannseggia ternata QL-PLN-00-007 597 bp View
AY308495.1 nt Hoffmannseggia ternata isolate H20 ... 1032 bp Hoffmannseggia ternata QL-PLN-00-007 597 bp View
AY308497.1 nt Hoffmannseggia trifoliata isolate H... 1027 bp Hoffmannseggia trifoliata QL-PLN-00-007 590 bp View
AY308499.1 nt Hoffmannseggia viscosa isolate 172 ... 1032 bp Hoffmannseggia viscosa QL-PLN-00-007 597 bp View
AY308500.1 nt Hoffmannseggia watsonii isolate 174... 1047 bp Hoffmannseggia watsonii QL-PLN-00-007 591 bp View
AY308501.1 nt Hoffmannseggia yaviensis isolate H8... 1053 bp Hoffmannseggia yaviensis QL-PLN-00-007 590 bp View
AY308502.1 nt Hoffmannseggia erecta x Hoffmannseg... 1027 bp Hoffmannseggia erecta x Hoffmannseggia trifoliata QL-PLN-00-007 590 bp View
AY308503.1 nt Hoffmannseggia erecta x Hoffmannseg... 1026 bp Hoffmannseggia erecta x Hoffmannseggia trifoliata QL-PLN-00-007 590 bp View
AY319077.1 nt Alphonsea boniana tRNA-Leu (trnL) g... 972 bp Alphonsea boniana QL-PLN-00-007 576 bp View
AY319078.1 nt Alphonsea elliptica tRNA-Leu (trnL)... 971 bp Alphonsea elliptica QL-PLN-00-007 576 bp View
AY319081.1 nt Alphonsea sp. Mols 16 tRNA-Leu (trn... 972 bp Alphonsea sp. Mols 16 QL-PLN-00-007 576 bp View
AY319082.1 nt Alphonsea sp. Kessler 3186 tRNA-Leu... 972 bp Alphonsea sp. 1 TC-2012 QL-PLN-00-007 576 bp View
AY319084.1 nt Polyalthia sp. Ridsdale DV-M1-12314... 980 bp Polyalthia sp. Ridsdale DV-M1-12314 QL-PLN-00-007 576 bp View
AY319085.1 nt Enicosanthum fuscum tRNA-Leu (trnL)... 980 bp Monoon fuscum QL-PLN-00-007 576 bp View
AY319086.1 nt Enicosanthum membranifolium tRNA-Le... 977 bp Monoon membranifolium QL-PLN-00-007 576 bp View
AY319091.1 nt Haplostichanthus longirostris tRNA-... 979 bp Polyalthia longirostris QL-PLN-00-007 576 bp View
AY319092.1 nt Marsypopetalum pallidum tRNA-Leu (t... 978 bp Marsypopetalum pallidum QL-PLN-00-007 576 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.