Match details
Record ID: |
AY308499.1 |
Database: |
nt |
Go to original record |
Description: |
Hoffmannseggia viscosa isolate 172 chloroplast trnL gene, partial sequence; trnL-trnF intergenic spacer; and trnF gene, partial sequence. |
Taxon: |
Hoffmannseggia viscosa |
Original size: |
1032 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
597 |
+ |
597 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggaaagg gagaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcgtttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata taatatatac
301 gtactgaaat actatttcaa ttgattagac cagacagacc ccaaatccct
351 aatttttaat atttatatga caaatgaaag atgtgaatag attccaagtt
401 gaagaaagaa tcgaatattt attgatcaaa tcattcactc catcatagtc
451 tgatagatct tttgaagaac tgattaatcg gacgagaata aagatagagt
501 cccattctac atgtcaatac cgacaacaat gaaatttcta gtaagaggaa
551 aatccgtcga ctttagaaat cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
597 |
578 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.