Match details
Record ID: |
AY308501.1 |
Database: |
nt |
Go to original record |
Description: |
Hoffmannseggia yaviensis isolate H8 chloroplast trnL gene, partial sequence; trnL-trnF intergenic spacer; and trnF gene, partial sequence. |
Taxon: |
Hoffmannseggia yaviensis |
Original size: |
1053 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
590 |
+ |
590 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 aggcaatcct gagccaaatc ctgtttttcg aaaaccaaga agagttcaga
151 aagggaaagg gagaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgatgaca tttcgtttcg ttagtaaagg aatccctcca
251 tcgaaactcc agaaaagaaa ggattaagga tgaacatata tacgtactga
301 aatactattt caattgatta caccagacag atcccaaatc cctatttttt
351 aatatttata tgacaaatga aagatgtgaa tagattccaa gttgaagaaa
401 gaatcgaata tttattgatc aaatcattca ctccatcata gtctgataga
451 ttttttgaag aactgattaa tcggacgaga ataaagatag agtcccattc
501 tacatgtcaa taccgacaac aatgaaattt atagtaagag gaaaatccgt
551 cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
590 |
571 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.