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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT381997.1 nt Luffa aegyptiaca chloroplast, compl... 157275 bp Luffa aegyptiaca QL-PLN-00-007 593 bp View
MT385088.1 nt Origanum majorana chloroplast, comp... 151841 bp Origanum majorana QL-PLN-00-007 544 bp View
MT422349.1 nt Veronica nakaiana voucher Y.-E. Lee... 152319 bp Veronica nakaiana QL-PLN-00-007 573 bp View
MT447061.1 nt Tabebuia nodosa plastid, partial ge... 158454 bp Tabebuia nodosa QL-PLN-00-007 571 bp View
MT471094.1 nt Coix lacryma-jobi var. stenocarpa i... 140863 bp Coix lacryma-jobi var. stenocarpa QL-PLN-00-007 524 bp View
MT471095.1 nt Coix lacryma-jobi var. maxima isola... 140864 bp Coix lacryma-jobi var. maxima QL-PLN-00-007 524 bp View
MT471096.1 nt Coix lacryma-jobi var. ma-yuen isol... 140864 bp Coix lacryma-jobi var. ma-yuen QL-PLN-00-007 524 bp View
MT471101.1 nt Coix lacryma-jobi var. ma-yuen isol... 140860 bp Coix lacryma-jobi var. ma-yuen QL-PLN-00-007 524 bp View
MT471102.1 nt Coix lacryma-jobi var. puellarum is... 140863 bp Coix lacryma-jobi var. puellarum QL-PLN-00-007 524 bp View
MT504972.1 nt Heteropogon contortus voucher K:781... 135095 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504973.1 nt Heteropogon contortus voucher K:320... 134979 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504974.1 nt Heteropogon contortus voucher K:108... 134991 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504975.1 nt Heteropogon contortus voucher K:572... 134979 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504976.1 nt Heteropogon contortus voucher K:388... 135078 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504977.1 nt Heteropogon contortus voucher K:334... 134979 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504978.1 nt Heteropogon contortus voucher K:174... 134987 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504979.1 nt Heteropogon contortus voucher K:A-3... 135112 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504980.1 nt Heteropogon contortus voucher BM:15... 135092 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504981.1 nt Heteropogon contortus voucher K:593... 135040 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504982.1 nt Heteropogon contortus voucher K:NOP... 134988 bp Heteropogon contortus QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.