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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN916578.1 nt Lycium barbarum var. auranticarpum ... 1131 bp Lycium barbarum var. auranticarpum QL-PLN-00-007 571 bp View
MN916579.1 nt Lycium ruthenicum clone V12L0008 He... 1131 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
MN916581.1 nt Lycium barbarum clone V12L0031 Ning... 1155 bp Lycium barbarum QL-PLN-00-007 595 bp View
MN935469.1 nt Streptocarpus ionanthus subsp. grot... 153215 bp Streptocarpus ionanthus subsp. grotei QL-PLN-00-007 541 bp View
MN935470.1 nt Streptocarpus ionanthus subsp. orbi... 153377 bp Streptocarpus ionanthus subsp. orbicularis QL-PLN-00-007 541 bp View
MN935471.1 nt Streptocarpus ionanthus subsp. gran... 153208 bp Streptocarpus ionanthus subsp. grandifolius QL-PLN-00-007 541 bp View
MN935472.1 nt Streptocarpus ionanthus subsp. velu... 153307 bp Streptocarpus ionanthus subsp. velutinus QL-PLN-00-007 541 bp View
MN935473.1 nt Streptocarpus ionanthus subsp. rupi... 153290 bp Streptocarpus ionanthus subsp. rupicola QL-PLN-00-007 541 bp View
MN970099.1 nt Dichanthelium commutatum voucher DE... 139577 bp Dichanthelium commutatum QL-PLN-00-007 613 bp View
MN983112.1 nt Dichanthelium dichotomum voucher IL... 140151 bp Dichanthelium dichotomum QL-PLN-00-007 613 bp View
MN990709.1 nt Cucumis melo cultivar Shengkaihua c... 156017 bp Cucumis melo QL-PLN-00-007 599 bp View
MO172213.1 emblrelpat Sequence 4319 from patent US 10337023. 13722 bp unidentified QL-PLN-00-007 615 bp View
MO331424.1 emblrelpat Sequence 9 from patent US 10385409. 640 bp unidentified QL-PLN-00-007 532 bp View
MO461056.1 emblrelpat Sequence 808 from patent US 10457954. 11106 bp unidentified QL-PLN-00-007 591 bp View
MP413044.1 emblrelpat Sequence 5 from Patent WO2019224298. 1260 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
MS903560.1 emblrelpat Sequence 9 from Patent EP3138929. 640 bp Zea mays QL-PLN-00-007 532 bp View
MT012420.1 nt Salvia miltiorrhiza f. alba chlorop... 151389 bp Salvia miltiorrhiza f. alba QL-PLN-00-007 529 bp View
MT012421.1 nt Salvia yangii chloroplast, complete... 151473 bp Salvia yangii QL-PLN-00-007 564 bp View
MT063116.1 nt Catalpa ovata chloroplast, complete... 158279 bp Catalpa ovata QL-PLN-00-007 563 bp View
MT066040.1 nt Rheum pumilum chloroplast, complete... 162156 bp Rheum pumilum QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.