Match details
Record ID: |
MN935472.1 |
Database: |
nt |
Go to original record |
Description: |
Streptocarpus ionanthus subsp. velutinus chloroplast, complete genome. |
Taxon: |
Streptocarpus ionanthus subsp. velutinus |
Original size: |
153307 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47912 |
48452 |
+ |
541 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgaagacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atccttgttt tctcaaaaca agggttcaga
151 gagcgaaaaa gaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgttggt agaggaattg aaacttcaga aaggatgaaa
251 cgtatctatt gaatactatt gattgatcag gcccacatct gtatctgggt
301 ttttgtatat gaaaaatgga agaattggtg tgaattgatt tcacattgat
351 aaaagaatcg aatattcatt gatcaaatca ttgaccccat agtccgatag
401 gtctcttaaa gaattgatta ttcggacgag aataaagata gagtcccgtt
451 ctacatgtca ataccgacaa caatgaaact tatagtaaga ggaaaatccg
501 tcgactttaa aaatcgtgag ggttcaagtc cctctatccc c
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.43e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
541 |
522 |
2.43e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.