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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 541 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgaagacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atccttgttt tctcaaaaca agggttcaga
151   gagcgaaaaa gaggataggt gcagagactc aatggaagct gttctaacaa
201   atggagttga ctgcgttggt agaggaattg aaacttcaga aaggatgaaa
251   cgtatctatt gaatactatt gattgatcag gcccacatct gtatctgggt
301   ttttgtatat gaaaaatgga agaattggtg tgaattgatt tcacattgat
351   aaaagaatcg aatattcatt gatcaaatca ttgaccccat agtccgatag
401   gtctcttaaa gaattgatta ttcggacgag aataaagata gagtcccgtt
451   ctacatgtca ataccgacaa caatgaaact tatagtaaga ggaaaatccg
501   tcgactttaa aaatcgtgag ggttcaagtc cctctatccc c

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ492303.1 nt Saintpaulia velutina chloroplast tR... 939 bp Streptocarpus ionanthus subsp. velutinus QL-PLN-00-007 541 bp View
KR703939.1 nt Streptocarpus ionanthus subsp. rupi... 916 bp Streptocarpus ionanthus subsp. rupicola QL-PLN-00-007 541 bp View
MN935469.1 nt Streptocarpus ionanthus subsp. grot... 153215 bp Streptocarpus ionanthus subsp. grotei QL-PLN-00-007 541 bp View
MN935470.1 nt Streptocarpus ionanthus subsp. orbi... 153377 bp Streptocarpus ionanthus subsp. orbicularis QL-PLN-00-007 541 bp View
MN935471.1 nt Streptocarpus ionanthus subsp. gran... 153208 bp Streptocarpus ionanthus subsp. grandifolius QL-PLN-00-007 541 bp View
MN935472.1 nt Streptocarpus ionanthus subsp. velu... 153307 bp Streptocarpus ionanthus subsp. velutinus QL-PLN-00-007 541 bp View
MN935473.1 nt Streptocarpus ionanthus subsp. rupi... 153290 bp Streptocarpus ionanthus subsp. rupicola QL-PLN-00-007 541 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.