Match details

Record ID: MO461056.1
Database: emblrelpat Go to original record
Description: Sequence 808 from patent US 10457954.
Taxon: unidentified
Original size: 11106 bp
Patents: US10457954 (lens, espacenet)

Method: QL-PLN-00-007 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of chloroplast tRNA-Leu intron (ISO/FDIS 21569:2005).
Target:chloroplast tRNA-Leu (trnL) intron

View other 20492 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 620 1210 - 591 bp

Amplicon: 591 bp
1     cgaaatcggt agacgctacg gacttgattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ctgttttcag aaaaaaatta aggtatttct
151   gaaagcgaga ataaaaaaag gataggtgca gagactcaat ggaagctgtt
201   ctaatgaatg gagttgactg cgttggtaga ggactccttc tattcaattt
251   gaatttaaac tccataaaga atgagggata aacctacgat acgtaagtat
301   acgtactgaa atatcaaaga ttctattaat gtcgccctaa aattttttta
351   cataaaaaaa aggaataatt tttgtgaatc tattccaagt tgaaggaaga
401   atcgaatatt cagtaatcaa accattcact ccatagtctg atatatcttt
451   tgacgaactg attaatcgga cgagaataaa gatagagtcc cgttctacat
501   gtcaatatca atacagacaa caatgaaatt tatagtaaga ggaaaatccg
551   tcgactttat aaatcgtgag ggttcaagtc cctctatccc c 

View other 5 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 20 bp 0 0 1 20 2.66e-08
primerB 100.0 20 bp 0 0 591 572 2.66e-08


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.