Match details
Record ID: |
MN916581.1 |
Database: |
nt |
Go to original record |
Description: |
Lycium barbarum clone V12L0031 Ningnongqi No.5 trnL-trnF intergenic spacer region, partial sequence; chloroplast. |
Taxon: |
Lycium barbarum |
Original size: |
1155 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
112 |
706 |
+ |
595 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151 agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201 gagttaaatg cattggtaga ggaatcttta catcgaaact tcagaaagaa
251 aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactcta
301 tcaaatgatt aatgacgacc cgaatccgta ttttttctat aaaaaataga
351 agaattggtg tgaatcgatt ctacagaatt ggtgtgaatc gattctacat
401 tgaagaaaga atcgaatatt cattgatcaa atcattcact ccatagtctg
451 atagatcctt tgaagaactg attaatcgga cgagaataaa gatagagtcc
501 cgttctacat gtcaataccg gcaacaatga aatttatagt aagaggaaaa
551 tccgtcgact ttaaaaatcg tgagggttca agtccctcta tcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
595 |
576 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.