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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP019623.1 nt Nicotiana tabacum SR1_120719 chloro... 155943 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AP019624.1 nt Nicotiana tabacum apxA_T2_120719 ch... 161907 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AP019625.1 nt Nicotiana tabacum apxC_T2_120719 ch... 140013 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
AY145343.1 nt Saururus cernuus trnT-trnL intergen... 1819 bp Saururus cernuus QL-PLN-00-007 574 bp View
AY305819.1 nt Magnolia officinalis trnL, trnL-trn... 983 bp Magnolia officinalis QL-PLN-00-007 565 bp View
AY305820.1 nt Magnolia officinalis subsp. biloba ... 983 bp Magnolia officinalis subsp. biloba QL-PLN-00-007 565 bp View
AY305821.1 nt Magnolia denudata trnL, trnL-trnF i... 982 bp Magnolia denudata QL-PLN-00-007 565 bp View
AY305822.1 nt Magnolia biondii trnL, trnL-trnF in... 982 bp Magnolia biondii QL-PLN-00-007 565 bp View
AY305823.1 nt Magnolia sprengeri trnL, trnL-trnF ... 982 bp Magnolia sprengeri QL-PLN-00-007 565 bp View
AY305824.1 nt Magnolia liliiflora trnL, trnL-trnF... 982 bp Magnolia liliiflora QL-PLN-00-007 565 bp View
AY305825.1 nt Magnolia delavayi trnL, trnL-trnF i... 983 bp Magnolia delavayi QL-PLN-00-007 565 bp View
AY305826.1 nt Manglietia conifera subsp. chingii ... 982 bp Magnolia conifera var. chingii QL-PLN-00-007 564 bp View
AY305827.1 nt Manglietia insignis trnL, trnL-trnF... 985 bp Magnolia insignis QL-PLN-00-007 565 bp View
AY305828.1 nt Liriodendron chinense trnL, trnL-tr... 981 bp Liriodendron chinense QL-PLN-00-007 565 bp View
AY308483.1 nt Hoffmannseggia arequipensis isolate... 1040 bp Hoffmannseggia arequipensis QL-PLN-00-007 596 bp View
AY308484.1 nt Hoffmannseggia arequipensis isolate... 1040 bp Hoffmannseggia arequipensis QL-PLN-00-007 596 bp View
AY308485.1 nt Hoffmannseggia doelli isolate H13 c... 1027 bp Hoffmannseggia doellii QL-PLN-00-007 590 bp View
AY308486.1 nt Hoffmannseggia erecta isolate 161 c... 1027 bp Hoffmannseggia erecta QL-PLN-00-007 590 bp View
AY308487.1 nt Hoffmannseggia eremophila isolate 1... 1033 bp Hoffmannseggia eremophila QL-PLN-00-007 590 bp View
AY308488.1 nt Hoffmannseggia glauca isolate 176 c... 991 bp Hoffmannseggia glauca QL-PLN-00-007 590 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.