Match details
Record ID: |
AY308484.1 |
Database: |
nt |
Go to original record |
Description: |
Hoffmannseggia arequipensis isolate H16 chloroplast trnL gene, partial sequence; trnL-trnF intergenic spacer; and trnF gene, partial sequence. |
Taxon: |
Hoffmannseggia arequipensis |
Original size: |
1040 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
596 |
+ |
596 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc caaatcctgt ttttcgaaaa ccaagaagag
151 ttcagaaagg gaaagggaga aaaggatagg tgcagagact caacggaagc
201 tgttctaaca aatggagttg acgacatttc ctttcgttag taaaggaatc
251 cttccatcga aactccagaa aagaaaggat taaggatgaa catatatacg
301 tactgaaata ctatttcaat tgattacacc agacagaccc caaatcccta
351 ttttttaata tttatatgac aaatgaaaga tgtgaataga ttccaagttg
401 aagaaagaat cgaatattta ttgatcaaat cattcactcc atcatagtct
451 gatagatctt ttgaagaact gattaatcgg acgagaataa agatagagtc
501 ccgttctaca tgtcaatacc gacaacaatg aaatttatag taagaggaaa
551 atccgtcgac tttagaaatc gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
596 |
577 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.