Match details
Record ID: |
AY305828.1 |
Database: |
nt |
Go to original record |
Description: |
Liriodendron chinense trnL, trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Liriodendron chinense |
Original size: |
981 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
417 |
981 |
- |
565 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggg ttcagaaagc
151 gagaatcaaa aaaggatagg tgcagagact caatggaagc tgttctaacg
201 aatggagttg actgcattgg tagaggaatc gaatccttct atcgaaacta
251 cagaaaggat gaccctgtat acgtacgtat acatactgaa atatcaaacg
301 attaatcacg actcgaatcc gcattttttt atatgaaaaa tttaagaatt
351 attgtgaatc gattccaagt tgaaagaaga atcgaatatt cagtgatcaa
401 atcattcact cccgagtctg atagatcttt tgaagaactg attaatcgga
451 cgagaataaa gatagagtcc cattctacat gtcaatacag acaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttagaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.