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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK258139.1 nt Fritillaria yuzhongensis plastid, c... 151652 bp Fritillaria yuzhongensis QL-PLN-00-007 607 bp View
MK258140.1 nt Fritillaria unibracteata plastid, c... 151971 bp Fritillaria unibracteata QL-PLN-00-007 607 bp View
MK258141.1 nt Fritillaria sichuanica plastid, com... 151967 bp Fritillaria sichuanica QL-PLN-00-007 607 bp View
MK258142.1 nt Fritillaria przewalskii plastid, co... 151688 bp Fritillaria przewalskii QL-PLN-00-007 607 bp View
MK258146.1 nt Fritillaria dajinensis plastid, com... 151971 bp Fritillaria dajinensis QL-PLN-00-007 607 bp View
MK265246.1 nt Tetraena mongolica chloroplast, com... 106288 bp Tetraena mongolica QL-PLN-00-007 537 bp View
MK281588.1 nt Siraitia grosvenorii chloroplast, c... 158757 bp Siraitia grosvenorii QL-PLN-00-007 603 bp View
MK331720.1 nt Tetraena mongolica chloroplast, com... 106081 bp Tetraena mongolica QL-PLN-00-007 536 bp View
MK341052.1 nt Zygophyllum fabago chloroplast, com... 104984 bp Zygophyllum fabago QL-PLN-00-007 541 bp View
MK342624.1 nt Oreocharis mileensis chloroplast, c... 153259 bp Oreocharis mileensis QL-PLN-00-007 550 bp View
MK342634.1 nt Coffea arabica isolate CH3 chloropl... 155191 bp Coffea arabica QL-PLN-00-007 570 bp View
MK344723.1 nt Salvia przewalskii plastid, complet... 152678 bp Salvia przewalskii QL-PLN-00-007 530 bp View
MK347419.1 nt Anisodus tanguticus chloroplast, co... 155764 bp Anisodus tanguticus QL-PLN-00-007 571 bp View
MK348603.1 nt Setaria italica isolate 56A chlorop... 139159 bp Setaria italica QL-PLN-00-007 613 bp View
MK348604.1 nt Setaria italica isolate datong29lv ... 139176 bp Setaria italica QL-PLN-00-007 613 bp View
MK348605.1 nt Setaria italica isolate datong28 ch... 139218 bp Setaria italica QL-PLN-00-007 613 bp View
MK348606.1 nt Zea mays isolate Zhengdan958 chloro... 140454 bp Zea mays QL-PLN-00-007 532 bp View
MK348609.1 nt Setaria italica isolate 572A chloro... 139261 bp Setaria italica QL-PLN-00-007 613 bp View
MK348612.1 nt Sorghum bicolor isolate SbJ200 chlo... 140663 bp Sorghum bicolor QL-PLN-00-007 523 bp View
MK348618.1 nt Oryza sativa isolate Jingeng818 chl... 134435 bp Oryza sativa QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.