Match details
Record ID: |
MK265246.1 |
Database: |
nt |
Go to original record |
Description: |
Tetraena mongolica chloroplast, complete genome. |
Taxon: |
Tetraena mongolica |
Original size: |
106288 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47147 |
47683 |
+ |
537 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acatactaag tgatcacttt caaattcaga gaaaccctgg aattagaaat
101 gggcaatcct gagccaaatc ctgttttctg aaaaaaaaaa aataattcaa
151 tcaaaagaaa aagaatcaaa aaaggatagg tgcagagact caatggaagc
201 tgttctaaaa aatggagttg actgctgcat tatgttagtc aagtcaagga
251 atccttgcat aaaaactttc aaaaagatga aggataaact ttctttctat
301 aaaactctaa aaagaaaaat actttttcaa tcaattggaa gttgaataaa
351 gaatcaaata taatttgatc aaatcattta ctccaaagtc tgatatatct
401 ttttcaaaat ggattagtca gatgagaata aagatagagt cccattctat
451 atgtcagtat tgacaacaat gaaatttata gtgagaggaa aatccgtcga
501 ttttataaat cgtgagggtt caagtccctc tatcccc
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.42e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
537 |
518 |
2.42e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.