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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 537 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acatactaag tgatcacttt caaattcaga gaaaccctgg aattagaaat
101   gggcaatcct gagccaaatc ctgttttctg aaaaaaaaaa aataattcaa
151   tcaaaagaaa aagaatcaaa aaaggatagg tgcagagact caatggaagc
201   tgttctaaaa aatggagttg actgctgcat tatgttagtc aagtcaagga
251   atccttgcat aaaaactttc aaaaagatga aggataaact ttctttctat
301   aaaactctaa aaagaaaaat actttttcaa tcaattggaa gttgaataaa
351   gaatcaaata taatttgatc aaatcattta ctccaaagtc tgatatatct
401   ttttcaaaat ggattagtca gatgagaata aagatagagt cccattctat
451   atgtcagtat tgacaacaat gaaatttata gtgagaggaa aatccgtcga
501   ttttataaat cgtgagggtt caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON408217.1 nt Tetraena mongolica plastid, complet... 106170 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408220.1 nt Tetraena mongolica plastid, complet... 106156 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408221.1 nt Tetraena mongolica plastid, complet... 106163 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408222.1 nt Tetraena mongolica plastid, complet... 106179 bp Tetraena mongolica QL-PLN-00-007 537 bp View
ON408225.1 nt Tetraena mongolica plastid, complet... 106181 bp Tetraena mongolica QL-PLN-00-007 537 bp View
OQ743999.1 nt Tetraena mongolica plastid, complet... 106189 bp Tetraena mongolica QL-PLN-00-007 537 bp View
MK265246.1 nt Tetraena mongolica chloroplast, com... 106288 bp Tetraena mongolica QL-PLN-00-007 537 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.