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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF460973.1 nt Stipagrostis uniplumis var. uniplum... 138019 bp Stipagrostis uniplumis var. uniplumis QL-PLN-00-007 611 bp View
MF472011.1 nt Primulina eburnea chloroplast, comp... 152373 bp Primulina eburnea QL-PLN-00-007 551 bp View
MF480752.1 nt Nassella neesiana chloroplast, comp... 137700 bp Nassella neesiana QL-PLN-00-007 598 bp View
MF480753.1 nt Nassella hyalina chloroplast, compl... 137606 bp Nassella hyalina QL-PLN-00-007 598 bp View
MF491390.1 nt Fagopyrum dibotrys chloroplast, com... 159919 bp Fagopyrum dibotrys QL-PLN-00-007 577 bp View
MF521632.1 nt Scutellaria baicalensis isolate BOP... 151824 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
MF521633.1 nt Scutellaria baicalensis isolate BOP... 151817 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
MF536696.1 nt Cucumis melo subsp. agrestis isolat... 156035 bp Cucumis melo subsp. agrestis QL-PLN-00-007 593 bp View
MF536697.1 nt Cucumis melo subsp. agrestis isolat... 156015 bp Cucumis melo subsp. agrestis QL-PLN-00-007 599 bp View
MF536698.1 nt Cucumis melo subsp. agrestis isolat... 156011 bp Cucumis melo subsp. agrestis QL-PLN-00-007 599 bp View
MF536699.1 nt Cucumis melo var. conomon isolate P... 156017 bp Cucumis melo var. conomon QL-PLN-00-007 599 bp View
MF536700.1 nt Cucumis melo var. makuwa isolate M1... 156016 bp Cucumis melo var. makuwa QL-PLN-00-007 599 bp View
MF536701.1 nt Cucumis melo var. momordica isolate... 155815 bp Cucumis melo var. momordica QL-PLN-00-007 605 bp View
MF536702.1 nt Cucumis melo var. dudaim isolate C-... 156017 bp Cucumis melo var. dudaim QL-PLN-00-007 599 bp View
MF536703.1 nt Cucumis melo var. cantalupo isolate... 155816 bp Cucumis melo var. cantalupo QL-PLN-00-007 605 bp View
MF536704.1 nt Cucumis melo var. cantalupo isolate... 155815 bp Cucumis melo var. cantalupo QL-PLN-00-007 605 bp View
MF536705.1 nt Cucumis melo var. inodorus isolate ... 156016 bp Cucumis melo var. inodorus QL-PLN-00-007 599 bp View
MF536706.1 nt Cucumis melo var. cantalupo isolate... 155815 bp Cucumis melo var. cantalupo QL-PLN-00-007 605 bp View
MF536707.1 nt Cucumis melo var. flexuosus isolate... 155815 bp Cucumis melo var. flexuosus QL-PLN-00-007 605 bp View
MF536708.1 nt Cucumis melo var. flexuosus isolate... 155816 bp Cucumis melo var. flexuosus QL-PLN-00-007 605 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.