Match details
Record ID: |
MF536707.1 |
Database: |
nt |
Go to original record |
Description: |
Cucumis melo var. flexuosus isolate PI 525133 chloroplast, complete genome. |
Taxon: |
Cucumis melo var. flexuosus |
Original size: |
155815 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49404 |
50008 |
+ |
605 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc cttttttccg aaaaaaaagg gtaggtgcag
151 agactcaatg gaagctgttc taacaaatgg agttgacgac gttgcgttag
201 taaaggaatg aatccttcca tcgaaactcc agaaacgatg aaagataaac
251 gtattacgta ctgaaatact atattgatta atgacaactc gaatctctat
301 tttttatatt tctataattt tttatattta tatttatata tatatataaa
351 attatatata aaaatgaacg aattgttatg aatcgattcc aagatctaca
401 agttgaaaaa ataatcgaat attcattgat caaatcattt actccatcat
451 agtctgatag atcttttgaa gaattgatta atcagatcga atagaataaa
501 gatagagtcc cattctacat gtcaataacg acaaaaatga aatttatagt
551 aagaggaaaa tccgtcgact tttaaaatcg tgagggttca agtccctcta
601 tcccc
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
605 |
586 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.