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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY610124.1 nt Chrysopogon zizanioides isolate PI ... 139971 bp Chrysopogon zizanioides QL-PLN-00-007 525 bp View
KY636081.1 nt Brachypodium pinnatum voucher AH 20... 114787 bp Brachypodium pinnatum QL-PLN-00-007 612 bp View
KY646167.1 nt Fritillaria cirrhosa chloroplast, c... 151083 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View
KY656311.1 nt Agrimonia repens isolate Chung 0907... 943 bp Agrimonia repens QL-PLN-00-007 545 bp View
KY682273.1 nt Ilex cornuta isolate ICM tRNA-Leu (... 566 bp Ilex cornuta QL-PLN-00-007 566 bp View
KY682277.1 nt Ilex rotunda isolate IRM tRNA-Leu (... 566 bp Ilex rotunda QL-PLN-00-007 566 bp View
KY697465.1 nt Viola reichenbachiana trnL gene, in... 577 bp Viola reichenbachiana QL-PLN-00-007 576 bp View
KY707767.1 nt Themeda triandra isolate AL01 chlor... 138877 bp Themeda triandra QL-PLN-00-007 525 bp View
KY707768.1 nt Heteropogon sp. AL04 chloroplast, c... 139044 bp Heteropogon sp. AL04 QL-PLN-00-007 525 bp View
KY707770.1 nt Themeda triandra isolate AL09 chlor... 138907 bp Themeda triandra QL-PLN-00-007 525 bp View
KY707771.1 nt Themeda triandra isolate AL88 chlor... 138891 bp Themeda triandra QL-PLN-00-007 525 bp View
KY707772.1 nt Themeda triandra isolate AL94 chlor... 138889 bp Themeda triandra QL-PLN-00-007 525 bp View
KY748298.1 nt Lilium primulinum var. ochraceum ch... 152306 bp Lilium primulinum var. ochraceum QL-PLN-00-007 609 bp View
KY860482.1 nt Colchicum decaisnei voucher E. Kaya... 1023 bp Colchicum decaisnei QL-PLN-00-007 617 bp View
KY860484.1 nt Colchicum triphyllum voucher E. Kay... 1022 bp Colchicum triphyllum QL-PLN-00-007 616 bp View
KY860487.1 nt Colchicum serpentinum voucher E. Ka... 1024 bp Colchicum serpentinum QL-PLN-00-007 617 bp View
KY860495.1 nt Colchicum triphyllum voucher E. Kay... 1025 bp Colchicum triphyllum QL-PLN-00-007 617 bp View
KY860497.1 nt Colchicum triphyllum voucher E. Kay... 1025 bp Colchicum triphyllum QL-PLN-00-007 617 bp View
KY860507.1 nt Colchicum triphyllum voucher E. Kay... 1023 bp Colchicum triphyllum QL-PLN-00-007 617 bp View
KY860509.1 nt Colchicum triphyllum voucher E. Kay... 1023 bp Colchicum triphyllum QL-PLN-00-007 617 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.