Match details
Record ID: |
KY682277.1 |
Database: |
nt |
Go to original record |
Description: |
Ilex rotunda isolate IRM tRNA-Leu (trnL) gene, intron; chloroplast. |
Taxon: |
Ilex rotunda |
Original size: |
566 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
566 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctatttt ccgaaaacaa agtgaaaata
151 aaaaggatag gtgcagagac tcaacggaag ctgttctaac aaatagagtt
201 gactgtgttg cattggtaga ggaatccttc tatcgaaacc tcagaaagga
251 tgaaggataa acctatatac atacgtactc aaataccata tcaaatgatt
301 aatgacgacc cgaatctgta tctatatttt tatatgaaaa atagaagaat
351 tgttatgaat cgattctaca ttaaagaaag aatcgaatat tcattgatca
401 aatcattcac tccatagtct gatagatctt ttgaggaact gattaatcgg
451 acgagaataa agatagagtc ccattctaca tgtcaatacc ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac tttagaaatc gtgagggttc
551 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.