Match details
Record ID: |
KY610124.1 |
Database: |
nt |
Go to original record |
Description: |
Chrysopogon zizanioides isolate PI 196257 chloroplast, complete genome. |
Taxon: |
Chrysopogon zizanioides |
Original size: |
139971 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48350 |
48874 |
+ |
525 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt gcaaactaga
151 acccaaagga aaaggatagg tgcagagact caatggaagc tgttctaacg
201 aatcgaagta ataacgatta atcacagaac ccatattata atataatata
251 ggttctttat tttattttta gaatgaaatt aggaatgatt atgaaataga
301 aaattcataa tttttttaga attattgtga atctattcca atcgaatatt
351 gattaatcaa atccttcaat tcattgtttt cgagatcttt taaaaagtgg
401 attaatcgga cgaggataaa gagagagtcc cattctacat gtcaatactg
451 acaacaatga aatttctagt aaaaggaaaa tccgtcgact ttataagtcg
501 tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.36e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
525 |
506 |
2.36e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.