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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY378673.1 nt Pavetta abyssinica chloroplast, par... 127496 bp Pavetta abyssinica QL-PLN-00-007 567 bp View
KY378684.1 nt Kohautia caespitosa chloroplast, pa... 128658 bp Kohautia caespitosa QL-PLN-00-007 606 bp View
KY378687.1 nt Anthospermum spathulatum chloroplas... 127269 bp Anthospermum spathulatum QL-PLN-00-007 590 bp View
KY378690.1 nt Plocama pendula chloroplast, partia... 126947 bp Plocama pendula QL-PLN-00-007 595 bp View
KY378814.1 nt Poa jubata voucher US:Soreng 9029-2... 1779 bp Poa jubata QL-PLN-00-007 611 bp View
KY378815.1 nt Poa jubata voucher US:Soreng 9266 t... 1768 bp Poa jubata QL-PLN-00-007 611 bp View
KY378817.1 nt Poa trivialis subsp. sylvicola vouc... 1744 bp Poa trivialis subsp. sylvicola QL-PLN-00-007 611 bp View
KY430683.1 nt Citrullus lanatus subsp. vulgaris c... 156891 bp none QL-PLN-00-007 586 bp View
KY430684.1 nt Citrullus lanatus subsp. vulgaris c... 156886 bp none QL-PLN-00-007 586 bp View
KY430685.1 nt Citrullus lanatus subsp. vulgaris c... 156699 bp none QL-PLN-00-007 586 bp View
KY430687.1 nt Citrullus mucosospermus cultivar PI... 156905 bp Citrullus lanatus subsp. mucosospermus QL-PLN-00-007 586 bp View
KY430688.1 nt Citrullus lanatus subsp. vulgaris p... 156906 bp none QL-PLN-00-007 586 bp View
KY430689.1 nt Citrullus lanatus subsp. vulgaris p... 156907 bp none QL-PLN-00-007 586 bp View
KY430690.1 nt Citrullus lanatus subsp. vulgaris p... 156907 bp none QL-PLN-00-007 586 bp View
KY430692.1 nt Citrullus lanatus subsp. vulgaris p... 156907 bp none QL-PLN-00-007 586 bp View
KY430693.1 nt Citrullus mucosospermus cultivar PI... 156905 bp Citrullus lanatus subsp. mucosospermus QL-PLN-00-007 586 bp View
KY432797.1 nt Stipagrostis hirtigluma voucher K:M... 138052 bp Stipagrostis hirtigluma QL-PLN-00-007 611 bp View
KY492076.1 nt Augusta austrocaledonica chloroplas... 128701 bp Augusta austrocaledonica QL-PLN-00-007 567 bp View
KY596120.1 nt Kerriochloa siamensis chloroplast, ... 138690 bp Kerriochloa siamensis QL-PLN-00-007 525 bp View
KY596126.1 nt Andropogon chinensis chloroplast, c... 138817 bp Andropogon chinensis QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.