Match details
Record ID: |
KY432797.1 |
Database: |
nt |
Go to original record |
Description: |
Stipagrostis hirtigluma voucher K:MSB 74902 chloroplast, complete genome. |
Taxon: |
Stipagrostis hirtigluma |
Original size: |
138052 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46907 |
47517 |
+ |
611 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc tcttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatgg aggtaattac gttgtgttgg tagtggacct ccctctaaat
251 tagagaaaga ggggctttat acatctaata cacacgtata tatactgaca
301 tagcaaacga ttaatcacag aacccatatc ataatatagg ttctttattt
351 atttagaatt tagaatgaaa ttaggaatga ttatgaaatt aaaaattctg
401 aatttttttt aattattgtg aatccaatcg aatattgagt aatcaaatcc
451 ttcaattcat tgttttcgag atcttttaaa aagtggatta atcggacgag
501 gataaagaga gagtcccatt ctacatgtca atactgacaa caatgaaatt
551 tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag ggttcaagtc
601 cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
611 |
592 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.