Match details
Record ID: |
KY430693.1 |
Database: |
nt |
Go to original record |
Description: |
Citrullus mucosospermus cultivar PI500301 plastid, complete genome. |
Taxon: |
Citrullus lanatus subsp. mucosospermus |
Original size: |
156905 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49563 |
50148 |
+ |
586 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctttttccga aaacaaaaaa agggtaggtg
151 cagagactca atggaagctg ttctaacaaa tggagttgac tacgttgcgt
201 tagtaaagga atgaatcctt ccatcgaaac tccagaaaag atgaaagata
251 aacgtattac gtactgaaat actatattga ttaatgacaa ctcgaatctc
301 tatttttttt tatttatata taaaaaatga tatataaaaa tgaacgaatt
351 gttatgaatc gattccaata tctccaagtt gaaaaaagaa tcgaatattc
401 attgatcaaa tcatttactc catcatacat agtctgatag atcttttgaa
451 gaacttatta atcagatgcg aatagaataa agatagagtc ccattctaca
501 tgtcaatacc gacaaaaatg aaatttatag taagaggaaa atccgtcgac
551 tttaaaaatc gtgagggttc aagtccctct atcccc
View other 8 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
586 |
567 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.