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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 586 bp 
1     cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ctttttccga aaacaaaaaa agggtaggtg
151   cagagactca atggaagctg ttctaacaaa tggagttgac tacgttgcgt
201   tagtaaagga atgaatcctt ccatcgaaac tccagaaaag atgaaagata
251   aacgtattac gtactgaaat actatattga ttaatgacaa ctcgaatctc
301   tatttttttt tatttatata taaaaaatga tatataaaaa tgaacgaatt
351   gttatgaatc gattccaata tctccaagtt gaaaaaagaa tcgaatattc
401   attgatcaaa tcatttactc catcatacat agtctgatag atcttttgaa
451   gaacttatta atcagatgcg aatagaataa agatagagtc ccattctaca
501   tgtcaatacc gacaaaaatg aaatttatag taagaggaaa atccgtcgac
551   tttaaaaatc gtgagggttc aagtccctct atcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY430683.1 nt Citrullus lanatus subsp. vulgaris c... 156891 bp none QL-PLN-00-007 586 bp View
KY430693.1 nt Citrullus mucosospermus cultivar PI... 156905 bp Citrullus lanatus subsp. mucosospermus QL-PLN-00-007 586 bp View
KY430684.1 nt Citrullus lanatus subsp. vulgaris c... 156886 bp none QL-PLN-00-007 586 bp View
KY430685.1 nt Citrullus lanatus subsp. vulgaris c... 156699 bp none QL-PLN-00-007 586 bp View
KY430687.1 nt Citrullus mucosospermus cultivar PI... 156905 bp Citrullus lanatus subsp. mucosospermus QL-PLN-00-007 586 bp View
KY430688.1 nt Citrullus lanatus subsp. vulgaris p... 156906 bp none QL-PLN-00-007 586 bp View
KY430689.1 nt Citrullus lanatus subsp. vulgaris p... 156907 bp none QL-PLN-00-007 586 bp View
KY430690.1 nt Citrullus lanatus subsp. vulgaris p... 156907 bp none QL-PLN-00-007 586 bp View
KY430692.1 nt Citrullus lanatus subsp. vulgaris p... 156907 bp none QL-PLN-00-007 586 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.