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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ620136.1 nt Fadogia ancylantha chloroplast trnT... 1723 bp Fadogia ancylantha QL-PLN-00-007 552 bp View
AJ620137.1 nt Fadogia cienkowskii chloroplast trn... 1706 bp Fadogia cienkowskii QL-PLN-00-007 552 bp View
AJ620138.1 nt Keetia zanzibarica chloroplast trnT... 1559 bp Keetia zanzibarica QL-PLN-00-007 552 bp View
AJ620140.1 nt Fadogia verdcourtii chloroplast trn... 1707 bp Fadogia verdcourtii QL-PLN-00-007 552 bp View
AJ620141.1 nt Fadogiella stigmatoloba chloroplast... 1667 bp Fadogiella stigmatoloba QL-PLN-00-007 553 bp View
AJ620142.1 nt Hutchinsonia barbata chloroplast tr... 1706 bp Hutchinsonia barbata QL-PLN-00-007 552 bp View
AJ620143.1 nt Keetia gueinzii chloroplast trnT-tr... 1730 bp Keetia gueinzii QL-PLN-00-007 542 bp View
AJ620144.1 nt Keetia lukei chloroplast trnT-trnL ... 1738 bp Keetia lukei QL-PLN-00-007 552 bp View
AJ620145.1 nt Keetia venosa chloroplast trnT-trnL... 1564 bp Keetia venosa QL-PLN-00-007 552 bp View
AJ620146.1 nt Lagynias dryadum chloroplast trnT-t... 1730 bp Vangueria dryadum QL-PLN-00-007 556 bp View
AJ620147.1 nt Lagynias lasiantha chloroplast trnT... 1737 bp Vangueria lasiantha QL-PLN-00-007 556 bp View
AJ620148.1 nt Leroya cf. richardiae Davis and Rak... 1735 bp Leroya aff. richardiae Davis & Rakotonasolo 2501 QL-PLN-00-007 552 bp View
AJ620149.1 nt Canthium tetraphyllum chloroplast t... 1721 bp Canthium tetraphyllum QL-PLN-00-007 552 bp View
AJ620150.1 nt Multidentia concrescens chloroplast... 1718 bp Multidentia concrescens QL-PLN-00-007 552 bp View
AJ620151.1 nt Multidentia fanshawei chloroplast t... 1731 bp Multidentia fanshawei QL-PLN-00-007 552 bp View
AJ620152.1 nt Pachystigma pygmaeum chloroplast tr... 1731 bp Vangueria pygmaea QL-PLN-00-007 556 bp View
AJ620153.1 nt Peponidium horridum chloroplast trn... 1729 bp Peponidium horridum QL-PLN-00-007 552 bp View
AJ620154.1 nt Peponidium sp. Pettersson and Nilss... 1735 bp Peponidium sp. Pettersson & Nilsson 752 QL-PLN-00-007 552 bp View
AJ620155.1 nt Canthium armatum chloroplast trnT-t... 1695 bp Canthium armatum QL-PLN-00-007 552 bp View
AJ620156.1 nt Pseudopeponidium asosa chloroplast ... 1567 bp Pseudopeponidium asosa QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.