Match details
Record ID: |
AJ620143.1 |
Database: |
nt |
Go to original record |
Description: |
Keetia gueinzii chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Bremer 3083 (UPS) |
Taxon: |
Keetia gueinzii |
Original size: |
1730 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
812 |
1353 |
+ |
542 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa agtgaaaagg
151 ggataggtgc agagactcaa tggaagctgt tctaacaaat ggagttggct
201 gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg ataaaacgta
251 tacgtattga atactatatc aaatgattaa tgacgactcg actgaatctg
301 tattttttat atgaaaatgg aagaattggt gtgactagat tccacattga
351 agaaagaatc gaatattcat tgattaaatg attcactcca tagtctgata
401 gatcttttca agaattgatt aatcggacga gaataaagat agagtcccgt
451 tctacatgtc aatgtcggca acaatgaaat ttatagtaag aggaaaatcc
501 gtcgacttta aaaatcgtga gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.44e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
542 |
523 |
2.44e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.