Match details
Record ID: |
AJ620142.1 |
Database: |
nt |
Go to original record |
Description: |
Hutchinsonia barbata chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Adam 20599 (UPS) |
Taxon: |
Hutchinsonia barbata |
Original size: |
1706 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
787 |
1338 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgctaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa tggaagttgt tctaacaaat
201 ggagttggct gcgttagtaa agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaaacgta tacgtattga atactatatc aaatgattaa tgacgcctcg
301 actgaatccg tattttttat atgaaaacgg aagaattgtt gtgaatagat
351 tccacattga agaaagaatc gaatattcat tgattaaacg attcactcca
401 tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451 agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaag
501 aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551 cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.