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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT366187.1 nt Markea sturmii isolate LB3258 tRNA-... 1717 bp Markea sturmii QL-PLN-00-007 572 bp View
KT366188.1 nt Markea ulei isolate LB3320 tRNA-Thr... 1705 bp Markea ulei QL-PLN-00-007 572 bp View
KT366189.1 nt Juanulloa speciosa isolate LB3214 t... 1701 bp Juanulloa speciosa QL-PLN-00-007 571 bp View
KT366190.1 nt Trianaea aff. nobilis GAW-2016 isol... 1710 bp Trianaea aff. nobilis GAW-2016 QL-PLN-00-007 579 bp View
KT366192.1 nt Trianaea nobilis isolate LB3268 tRN... 994 bp Trianaea nobilis QL-PLN-00-007 579 bp View
KT366193.1 nt Schultesianthus aff. megalandrus GA... 1699 bp Schultesianthus aff. megalandrus GAW-2016 QL-PLN-00-007 571 bp View
KT366195.1 nt Schultesianthus leucanthus isolate ... 1682 bp Schultesianthus leucanthus QL-PLN-00-007 571 bp View
KT366196.1 nt Schultesianthus megalandrus isolate... 1714 bp Schultesianthus megalandrus QL-PLN-00-007 571 bp View
KT366197.1 nt Schultesianthus crosbyanus isolate ... 1711 bp Schultesianthus crosbyanus QL-PLN-00-007 571 bp View
KT366198.1 nt Schultesianthus crosbyanus isolate ... 1702 bp Schultesianthus crosbyanus QL-PLN-00-007 571 bp View
KT366200.1 nt Schultesianthus coriaceus isolate L... 1701 bp Schultesianthus coriaceus QL-PLN-00-007 571 bp View
KT366201.1 nt Schultesianthus odoriferus isolate ... 1732 bp Schultesianthus odoriferus QL-PLN-00-007 560 bp View
KT366202.1 nt Juanulloa globifera isolate LB3282 ... 1696 bp Juanulloa globifera QL-PLN-00-007 553 bp View
KT366203.1 nt Markea lopezii isolate LB3315 tRNA-... 1700 bp Markea lopezii QL-PLN-00-007 578 bp View
KT366204.1 nt Markea lopezii isolate LB3447 tRNA-... 1708 bp Markea lopezii QL-PLN-00-007 578 bp View
KT366205.1 nt Markea huilensis isolate LB3284 tRN... 1686 bp Markea huilensis QL-PLN-00-007 578 bp View
KT366206.1 nt Markea epifita isolate LB3264 tRNA-... 1722 bp Markea epifita QL-PLN-00-007 578 bp View
KT366207.1 nt Solandra grandiflora isolate LB3295... 1714 bp Solandra grandiflora QL-PLN-00-007 571 bp View
KT366208.1 nt Solandra maxima isolate LB3273 tRNA... 1678 bp Solandra maxima QL-PLN-00-007 559 bp View
KT373815.1 nt Merostachys sp. Greco 18 chloroplas... 136334 bp Merostachys sp. Greco 18 QL-PLN-00-007 613 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.