Match details
Record ID: |
KT366203.1 |
Database: |
nt |
Go to original record |
Description: |
Markea lopezii isolate LB3315 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Markea lopezii |
Original size: |
1700 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
703 |
1280 |
+ |
578 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101 aatgggcaat cctgagccaa atcctgtttt cagaaaacaa acaaaggttc
151 agaaaaaaag gaaaaaggat aggtgcagag actcaatgga agctattcta
201 acaaatggag ttaaatgcgt tggtagagga atctttacat cgaaacttca
251 gaaagaaaaa gaatgaagtg aaggataaac gtatatacat acgtattgaa
301 tactatatca aatgattaat gacgacccga atccgtattt tttctataaa
351 aaatagaaga attggtgtga atcgattcta cattgaagaa agaattgaag
401 aatcattgat caaatcattc actccatagt ctgatagatc ttttgaagaa
451 ctgattaatc ggacgagaat aaagatagag tcccgttcta catgccaata
501 ccggcaacaa tgaaatttat agtaagagga aaatccgtcg actttaaaaa
551 tcgtgagggt tcaagtccct ctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.60e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
578 |
559 |
2.60e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.