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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM524042.1 nt Alopecurus glaucus voucher US:Breit... 1773 bp Alopecurus glaucus QL-PLN-00-007 615 bp View
KM524043.1 nt Alopecurus hitchcockii voucher US:P... 1722 bp Alopecurus hitchcockii QL-PLN-00-007 565 bp View
KM524044.1 nt Alopecurus japonicus voucher MO:Tsu... 1740 bp Alopecurus japonicus QL-PLN-00-007 562 bp View
KM524045.1 nt Alopecurus lanatus voucher CAN:Gill... 1771 bp Alopecurus lanatus QL-PLN-00-007 615 bp View
KM524046.1 nt Alopecurus magellanicus voucher US:... 1773 bp Alopecurus magellanicus QL-PLN-00-007 615 bp View
KM524047.1 nt Alopecurus myosuroides voucher CAN:... 1770 bp Alopecurus myosuroides QL-PLN-00-007 619 bp View
KM524049.1 nt Alopecurus ponticus voucher US:Sore... 1749 bp Alopecurus ponticus QL-PLN-00-007 618 bp View
KM524050.1 nt Alopecurus pratensis voucher CAN:Sa... 1775 bp Alopecurus pratensis QL-PLN-00-007 620 bp View
KM524051.1 nt Alopecurus saccatus voucher US:Howe... 1717 bp Alopecurus saccatus QL-PLN-00-007 565 bp View
KM524052.1 nt Alopecurus stejnegeri voucher US:Sl... 1773 bp Alopecurus stejnegeri QL-PLN-00-007 615 bp View
KM524053.1 nt Alopecurus textilis voucher US:Sore... 1752 bp Alopecurus textilis QL-PLN-00-007 621 bp View
KM524054.1 nt Alopecurus vaginatus voucher CAN:Gi... 1772 bp Alopecurus vaginatus QL-PLN-00-007 618 bp View
KM524055.1 nt Apera baytopiana voucher CAN:Gilles... 1793 bp Apera baytopiana QL-PLN-00-007 618 bp View
KM524056.1 nt Apera intermedia voucher CAN:Gilles... 1793 bp Apera intermedia QL-PLN-00-007 618 bp View
KM524057.1 nt Apera triaristata voucher CAN:Gille... 1792 bp Apera triaristata QL-PLN-00-007 618 bp View
KM524058.1 nt Arctophila fulva voucher CAN:Gilles... 1799 bp Arctophila fulva QL-PLN-00-007 613 bp View
KM524059.1 nt Arctophila fulva voucher US:Peterso... 1795 bp Arctophila fulva QL-PLN-00-007 609 bp View
KM524060.1 nt Bellardiochloa carica voucher CAN:G... 1802 bp Bellardiochloa carica QL-PLN-00-007 617 bp View
KM524061.1 nt Catabrosa aquatica voucher CAN:Gill... 1729 bp Catabrosa aquatica QL-PLN-00-007 611 bp View
KM524062.1 nt Catabrosella variegata subsp. varie... 1640 bp Catabrosella variegata subsp. variegata QL-PLN-00-007 607 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.