Match details
Record ID: |
KM524059.1 |
Database: |
nt |
Go to original record |
Description: |
Arctophila fulva voucher US:Peterson et al. 18565 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Arctophila fulva |
Original size: |
1795 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
851 |
1459 |
+ |
609 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaagaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttcgagaaag aagggcttta tacatctaat aaacacgtat agatacatag
301 caaacgatta atcacagaac ctatattata atatatggtt ctttattctt
351 ttttagaatg aaatagaaat gattatgaaa taaaaaattc agaatttttt
401 ttagaattat tgtgaataca ttccaatcga atatttagta atcaaatcct
451 tcaattcaaa gttttgaggt ctttaaaaaa gtggattaat cggacgagga
501 caaagagaga gtcccattct acatgtcaat actgacaaca atgaaatttc
551 tagtaaaagg aaaatccgtc gactttataa gtcgtgaggg ttcaagtccc
601 tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
609 |
590 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.