Match details
Record ID: |
KM524043.1 |
Database: |
nt |
Go to original record |
Description: |
Alopecurus hitchcockii voucher US:Peterson et al. 16256 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Alopecurus hitchcockii |
Original size: |
1722 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
822 |
1386 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtattttga gaaaacctgg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtattg ttagtggaat tccttctaaa
251 ttcgagaaag aagggcttta tacatgtaat aaacacgtat agatactgac
301 atagcaaacg attaatcaca gaacctatat tataatatat ggttctttat
351 tcttttttag aattattgtg aatacattcc aatcgaatat ttagtaatca
401 aatgcttcaa ttcaaagttt tgaggtcttt aaaaaagtgg attaatcgga
451 cgaggacaaa gagagagtcc cattctacat gtcaatactg acaacaatga
501 aatttctagt aaaaggaaaa tccgtcgact ttataagtcg tgagggttca
551 agtccctcta tcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.