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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ586063.1 nt Selago myriophylla chloroplast trnT... 1747 bp Selago myriophylla QL-PLN-00-007 568 bp View
AJ586064.1 nt Selago parvibractea chloroplast trn... 1737 bp Selago parvibractea QL-PLN-00-007 571 bp View
AJ586065.1 nt Selago setulosa chloroplast trnT-tr... 1732 bp Selago setulosa QL-PLN-00-007 571 bp View
AJ586067.1 nt Selago perplexa chloroplast trnT-tr... 1720 bp Selago perplexa QL-PLN-00-007 571 bp View
AJ586068.1 nt Selago levynsiae chloroplast trnT-t... 1798 bp Selago levynsiae QL-PLN-00-007 570 bp View
AJ586070.1 nt Selago saxatilis chloroplast trnT-t... 1638 bp Selago saxatilis QL-PLN-00-007 571 bp View
AJ586071.1 nt Selago impedita chloroplast trnT-tr... 1732 bp Selago impedita QL-PLN-00-007 570 bp View
AJ586072.1 nt Selago dolosa chloroplast trnT-trnL... 1747 bp Selago dolosa QL-PLN-00-007 570 bp View
AJ586073.1 nt Selago foliosa chloroplast trnT-trn... 1700 bp Selago foliosa QL-PLN-00-007 571 bp View
AJ586075.1 nt Selago spectabilis chloroplast trnT... 1735 bp Selago spectabilis QL-PLN-00-007 571 bp View
AJ586076.1 nt Selago variicalyx chloroplast trnT-... 1634 bp Selago variicalyx QL-PLN-00-007 571 bp View
AJ586077.1 nt Selago villosa chloroplast trnT-trn... 1736 bp Selago villosa QL-PLN-00-007 571 bp View
AJ586079.1 nt Microdon dubius chloroplast trnT-tr... 1731 bp Microdon dubius QL-PLN-00-007 571 bp View
AJ586080.1 nt Selago densiflora chloroplast trnT-... 1564 bp Selago densiflora QL-PLN-00-007 571 bp View
AJ586081.1 nt Selago atherstonei chloroplast trnT... 1758 bp Selago atherstonei QL-PLN-00-007 571 bp View
AJ586086.1 nt Selago myrtifolia chloroplast trnT-... 1652 bp Selago myrtifolia QL-PLN-00-007 570 bp View
AJ586087.1 nt Phyllopodium dolomiticum chloroplas... 1691 bp Phyllopodium dolomiticum QL-PLN-00-007 565 bp View
AJ586091.1 nt Glumicalyx goseloides chloroplast t... 1763 bp Glumicalyx goseloides QL-PLN-00-007 568 bp View
AJ586092.1 nt Glumicalyx montanus chloroplast trn... 1635 bp Glumicalyx montanus QL-PLN-00-007 568 bp View
AJ586093.1 nt Glumicalyx flanaganii chloroplast t... 1767 bp Glumicalyx flanaganii QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.