Match details
Record ID: |
AJ586072.1 |
Database: |
nt |
Go to original record |
Description: |
Selago dolosa chloroplast trnT-trnL intergenic spacer, trnL gene, and trnL-trnF intergenic spacer, specimen voucher Kornhall 102 (UPS) |
Taxon: |
Selago dolosa |
Original size: |
1747 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
818 |
1387 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtacggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aataataaaa
101 atgggcaatc ctgagccaaa tcctgttttc tcaaaacaaa ggttcagaag
151 gcaaaaaagg gataggtgca gagactcaat ggaagttgtt ctaacaaatg
201 gagttgactt cgttggtaga ggaatctctc catcgaaact tcagaaaggg
251 tgacgggtaa ccgtatctat tgaatactct atcaaaatca aatgattaat
301 ggtgccccga atccgtatct gtatttttga tctaaaaagt ggaaaatttt
351 gtgtgaattt attccaccat tgaagaaaga attaactaaa atattcattc
401 atcaaattat tcactccata gtctgataga tctttaaaag atctgattaa
451 ttggacaaga ataaagatag agtcccattc tacatgtcaa taccggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.