Match details
Record ID: |
AJ586073.1 |
Database: |
nt |
Go to original record |
Description: |
Selago foliosa chloroplast trnT-trnL intergenic spacer, trnL gene, and trnL-trnF intergenic spacer, specimen voucher Bremer 3816 (UPS) |
Taxon: |
Selago foliosa |
Original size: |
1700 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
769 |
1339 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtacggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 ggcaaaaaag ggataggtgc agagactcaa tggaagttgt tctaacaaat
201 ggagttgact tcgttggtag aggaatctct ccatcgaaac ttcagaaagg
251 gtgacgggta aacgtatcta ttgaatactc tatcaaaatc aaatgattaa
301 tggtgccccg aatccgtatc tgtatttttg atataaaaag tggaaaattt
351 ggtgtgaatt tattccacca ttgaagaaag aattaactaa aatattcatt
401 catcaaatca ttcactccat agtctcatag atcttttaaa gatctgatta
451 attggacaag aataaagata gagtcccatt ctacatgtca ataccggcaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.