Match details
Record ID: |
AJ586087.1 |
Database: |
nt |
Go to original record |
Description: |
Phyllopodium dolomiticum chloroplast trnT-trnL intergenic spacer, trnL gene, and trnL-trnF intergenic spacer, specimen voucher Vlok 2348 (S) |
Taxon: |
Phyllopodium dolomiticum |
Original size: |
1691 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
747 |
1311 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 ggcaaaaagg gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttgactt cgttggtaga ggaatgaaac ttcagaaagg gtgacgggta
251 aacgtatcta ttgaatactc tatcaaaatt aaatgattaa tggtgccccg
301 aatctgtatc tgtatttttt atataaaaat atcaaaagtg gaaaatttgg
351 tgtgaattta ttccaccatt aaagaattaa ctaaaatatt cattcatcaa
401 atcattcact ccatagtctg atagatcttt taaagatctt attaattgga
451 caagaataaa gatagagtcc cattctacat gtcaataccg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.