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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF488319.1 nt Rytigynia uhligii voucher Verstraet... 883 bp Rytigynia uhligii QL-PLN-00-007 552 bp View
KF488320.1 nt Vangueria cinerascens voucher Verst... 1685 bp Vangueria cinerascens QL-PLN-00-007 552 bp View
KF488321.1 nt Vangueria infausta voucher Verstrae... 1689 bp Vangueria infausta QL-PLN-00-007 556 bp View
KF488324.1 nt Vangueria infausta voucher Verstrae... 1687 bp Vangueria infausta QL-PLN-00-007 556 bp View
KF488330.1 nt Vangueria infausta voucher Verstrae... 1687 bp Vangueria infausta QL-PLN-00-007 556 bp View
KF488334.1 nt Vangueria infausta voucher Verstrae... 1689 bp Vangueria infausta QL-PLN-00-007 556 bp View
KF488336.1 nt Vangueria latifolia voucher Lemaire... 1698 bp Vangueria latifolia QL-PLN-00-007 556 bp View
KF488337.1 nt Vangueria pygmaea voucher Verstraet... 1687 bp Vangueria pygmaea QL-PLN-00-007 556 bp View
KF488338.1 nt Vangueria volkensii voucher Verstra... 1687 bp Vangueria volkensii QL-PLN-00-007 556 bp View
KF539845.2 nt Secamone afzelii plastid, partial g... 154461 bp Secamone afzelii QL-PLN-00-007 559 bp View
KF539847.1 nt Astephanus triflorus plastid, parti... 133308 bp Astephanus triflorus QL-PLN-00-007 560 bp View
KF539848.1 nt Eustegia minuta plastid, partial ge... 127916 bp Eustegia minuta QL-PLN-00-007 549 bp View
KF539849.1 nt Marsdenia astephanoides plastid, pa... 123061 bp Ruehssia astephanoides QL-PLN-00-007 550 bp View
KF539852.1 nt Sisyranthus trichostomus plastid, p... 127337 bp Sisyranthus trichostomus QL-PLN-00-007 551 bp View
KF539853.1 nt Telosma cordata plastid, partial ge... 129028 bp Telosma cordata QL-PLN-00-007 550 bp View
KF562709.1 nt Oryza rufipogon cultivar DongXiang ... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
KF765507.1 nt Taxus contorta isolate HZ17 tRNA-Le... 853 bp Taxus contorta QL-PLN-00-007 522 bp View
KF765508.1 nt Taxus contorta isolate CH9 tRNA-Leu... 853 bp Taxus contorta QL-PLN-00-007 522 bp View
KF765509.1 nt Taxus contorta isolate SW10 tRNA-Le... 853 bp Taxus contorta QL-PLN-00-007 522 bp View
KF769142.1 nt Fritillaria unibracteata var. wabue... 151009 bp Fritillaria unibracteata var. wabuensis QL-PLN-00-007 607 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.