Match details
Record ID: |
KF539853.1 |
Database: |
nt |
Go to original record |
Description: |
Telosma cordata plastid, partial genome. |
Taxon: |
Telosma cordata |
Original size: |
129028 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48695 |
49244 |
+ |
550 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctattttc aggttcagaa aacgaaaaca
151 aggataggtg cagagactcg acggaagctg ttctaacaaa tggagttggc
201 cgcgttggta gagaaatctt tccatcgaaa attcagaaag gatgaaagat
251 atacatacgt atcgaatact atatcaaatg attaatgccg accccaatga
301 gtctgtattt tttctataaa aacggaagaa ttggtgtgat tcgattcttt
351 cttcaatgtg gaatcgaata ttcattgatc aaaagattca ctccatagtc
401 tgtagatctt cttttcaaga actggattaa tcggacgaga ataaagatag
451 agtcccgttc tacatgtcaa tgctggcaac aatgcaattt tgagtaagag
501 gaaaatccgt cgacttaaaa aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
550 |
531 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.