Match details
Record ID: |
KF539845.2 |
Database: |
nt |
Go to original record |
Description: |
Secamone afzelii plastid, partial genome. |
Taxon: |
Secamone afzelii |
Original size: |
154461 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48282 |
48840 |
+ |
559 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctattttc cacaaacaaa ggttcagaaa
151 acgaaaacaa ggataggtgc agagactcga cggaagctgt tctaacaaat
201 ggagttggcc gcgttggtag agaaatcttt ccatcgaaaa ttcagaaagg
251 atgaaagata tacatacgta ttgaatacta tatcaaatga ttaatgccga
301 cccgaatgaa tctgtatttt tctataaaaa acggaagaat tggtgtgatt
351 cgattctttc ttcaatgtgg aatcgaatat tcattgatca aatgattcac
401 tccatagtct gtagatcctc ttttcaagaa ccggattaat cggacgagaa
451 taaagataga gtcccgttct acatgtcaat gctggcaaca atgaaattta
501 tagtaagagg aaaatccgtc gacttaaaaa atcgtgaggg ttcaagtccc
551 tctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
559 |
540 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.