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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KC414301.1 nt Salvia przewalskii isolate 51119003... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414303.1 nt Salvia przewalskii isolate 51119003... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414304.1 nt Salvia przewalskii isolate 51119003... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414305.1 nt Salvia przewalskii isolate 51119003... 884 bp Salvia przewalskii QL-PLN-00-007 525 bp View
KC414306.1 nt Salvia przewalskii isolate 51119004... 887 bp Salvia przewalskii QL-PLN-00-007 528 bp View
KC414307.1 nt Salvia przewalskii isolate 51119004... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414308.1 nt Salvia przewalskii isolate 51119004... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414309.1 nt Salvia przewalskii isolate 51119004... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414310.1 nt Salvia przewalskii isolate 51119004... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414311.1 nt Salvia przewalskii isolate 51119004... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414314.1 nt Salvia przewalskii var. mandarinoru... 888 bp Salvia przewalskii var. mandarinorum QL-PLN-00-007 529 bp View
KC414315.1 nt Salvia przewalskii isolate 51119004... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414317.1 nt Salvia przewalskii isolate 51119005... 889 bp Salvia przewalskii QL-PLN-00-007 530 bp View
KC414318.1 nt Salvia schizochila isolate 51119005... 888 bp Salvia schizochila QL-PLN-00-007 529 bp View
KC414319.1 nt Salvia sclarea isolate 511190054 tR... 897 bp Salvia sclarea QL-PLN-00-007 553 bp View
KC414320.1 nt Salvia splendens isolate 511190055 ... 905 bp Salvia splendens QL-PLN-00-007 557 bp View
KC414321.1 nt Salvia tesquicola isolate 511190056... 915 bp Salvia tesquicola QL-PLN-00-007 571 bp View
KC414322.1 nt Salvia trijuga isolate 511190057 tR... 889 bp Salvia trijuga QL-PLN-00-007 530 bp View
KC414323.1 nt Salvia x sylvestris isolate 5111900... 888 bp Salvia x sylvestris QL-PLN-00-007 529 bp View
KC429705.1 nt Lonicera caerulea tRNA-Leu (trnL) g... 1016 bp Lonicera caerulea QL-PLN-00-007 587 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.